Parasitology
Parasitology: Intestinal Protozoa, Helminths, and Immunocompromised-Host Infections
On this page
Intestinal protozoa are small and must be separated from nonpathogens, inflammatory cells, epithelial cells, yeasts, and pollen. Identification depends on size measured with an ocular micrometer, motility pattern seen only on wet mount, and nuclear and cytoplasmic detail on a permanently stained preparation (trichrome or iron hematoxylin). Report two populations from one specimen only when both are distinctly identified.
Intestinal amebae
Three genera (Entamoeba, Endolimax, Iodamoeba) inhabit the human colon; only E. histolytica invades tissue.
| Species | Size | Motility | Nuclei | Peripheral chromatin | Karyosome | Inclusions |
|---|---|---|---|---|---|---|
| E. histolytica/E. dispar | 10-60 μm (commensal 15-20 μm; invasive >20 μm) | Progressive, hyaline fingerlike pseudopods | 1 | Fine, evenly distributed | Small, discrete, usually central | Erythrocytes (supports E. histolytica but may rarely occur with E. dispar); bacteria (noninvasive) |
| E. hartmanni | 5-12 μm (usual 8-10) | Usually nonprogressive | 1 | Similar to E. histolytica | Small, discrete, often eccentric | Bacteria |
| E. coli | 15-50 μm (usual 20-25) | Sluggish, blunt pseudopods | 1 | Coarse, irregular | Large, discrete, eccentric | Bacteria, yeasts, debris |
| Endolimax nana | 6-12 μm (usual 8-10) | Sluggish, blunt pseudopods | 1 | None | Large, irregular | Bacteria |
| Iodamoeba buetschlii | 8-20 μm (usual 12-15) | Sluggish | 1 | None | Large, central, ringed by refractile achromatic granules | Bacteria, yeasts, debris |
| Dientamoeba fragilis (flagellate, ameboid appearance) | 5-15 μm (usual 9-12) | Angular/serrated/broad-lobed pseudopods | 1-2 (binucleate predominates) | None | Large cluster of 4-8 granules | Bacteria, yeasts |
| Species | Size | Nuclei (mature) | Chromatoid bodies | Glycogen |
|---|---|---|---|---|
| E. histolytica/E. dispar | 10-20 μm (usual 12-15) | 4 (1-2 in immature cysts) | Elongate, bluntly rounded ends | Diffuse; concentrated mass in young cysts |
| E. hartmanni | 5-10 μm (usual 6-8) | 4 | Elongate, blunt ends | Similar to E. histolytica |
| E. coli | 10-35 μm (usual 15-25) | 8 (occasionally 16+) | Splinterlike, pointed ends | Usually diffuse |
| Endolimax nana | 5-10 μm (usual 6-8) | 4 | Absent | Diffuse; concentrated mass in young cysts |
| Iodamoeba buetschlii | 5-20 μm (usual 10-12) | 1 | Absent | Compact, well-defined mass |
Dientamoeba fragilis and Pentatrichomonas hominis form no cyst. E. coli’s 8-nucleus mature cyst is the single most reliable feature separating it from the 4-nucleus E. histolytica/E. dispar/E. hartmanni group. E. hartmanni is a small-bodied look-alike separated by micrometer measurement (trophozoite 12 μm or smaller, cyst 10 μm or smaller); fixative-induced shrinkage of true E. histolytica/E. dispar can cause overcalling of E. hartmanni. Five trophozoites measuring 8, 9, 10, 11, and 9.5 μm (mean 9.5 μm) fall within the E. hartmanni range and below the usual 15-20 μm commensal E. histolytica/E. dispar range.
E. histolytica and E. dispar are morphologically identical. Only antigen or molecular testing separates them. A laboratory without such testing must report “E. histolytica/E. dispar”. Erythrophagocytosis supports E. histolytica but is not reliable enough to separate the species.
Clinical disease from E. histolytica ranges from asymptomatic carriage through amebic dysentery to amebic colitis, the more common U.S. presentation. Trophozoites that breach the mucosa can form an amebic liver abscess (ALA). Stool examination recovers organisms in fewer than half of ALA cases. Serology is positive in about 95% of ALA, 70% of active intestinal disease, and 10% of asymptomatic carriers.
Blastocystis is frequently found in asymptomatic stool; most laboratories report it only to genus. Stool forms are pleomorphic (5-40 μm), classically with a large central body; on trichrome the central body typically stains green against pink peripheral cytoplasm.
Flagellates and ciliates
| Species | Size | Shape | Motility | Nuclei | Distinguishing feature |
|---|---|---|---|---|---|
| Giardia duodenalis (trophozoite) | 10-20 μm (usual 12-15) | Pear-shaped, tapered posteriorly | Falling leaf | 2 | Ventral sucking disk; curved median bodies give a smiling-face appearance |
| Giardia duodenalis (cyst) | 8-13 μm (usual 11-12) | Oval/ellipsoidal | - | Usually 4 | Axonemes cross beneath nuclei; cytoplasm often retracted from wall |
| Chilomastix mesnili (trophozoite) | 6-24 μm (usual 10-15) | Pear-shaped | Stiff, rotary | 1 | Prominent cytostome, spiral ventral groove |
| Chilomastix mesnili (cyst) | 6-10 μm (usual 8-9) | Lemon-shaped with hyaline nipple | - | 1 | Curved cytostomal fibrils, safety-pin appearance |
| Pentatrichomonas hominis | 8-20 μm (usual 11-12) | Pear-shaped | Rapid, jerking | 1 | Undulating membrane the full body length; no cyst |
| Trichomonas vaginalis | Up to 23 μm | Similar to P. hominis | Jerky | 1 | Undulating membrane only about half the body length; urogenital habitat; no cyst |
| Enteromonas hominis | 4-10 μm (usual 8-9) | Oval | Jerking | 1 | One side flattened |
| Retortamonas intestinalis | 4-9 μm (usual 6-7) | Pear/oval | Jerking | 1 | Cytostome extends about half body length |
Giardia duodenalis is the most widespread waterborne protozoan pathogen; chlorination alone does not reliably inactivate cysts. Trophozoites attach to duodenal mucosa. Disease ranges from asymptomatic to a malabsorptive, steatorrheic syndrome. Suspect giardiasis in diarrhea persisting beyond 10 days. Shedding is intermittent, so multiple specimens plus antigen/NAAT improve yield over a single O&P.
Trichomonas vaginalis is a common sexually transmitted infection. Direct wet mount of vaginal, prostatic, or fresh urine sediment is fast but insensitive. CDC 2021 reports wet-mount sensitivity of 44-68% versus culture, falling to about 20% within 1 hour if the slide is not examined immediately, and recommends a more sensitive molecular test, including NAAT, with a negative wet mount when possible. Most platforms are cleared for female specimens only.1
Chilomastix mesnili, Pentatrichomonas hominis, Enteromonas hominis, and Retortamonas intestinalis are nonpathogenic commensals whose main clinical relevance is being mistaken for pathogens. Dientamoeba fragilis has flagellate ultrastructure but an ameboid light-microscopic appearance; permanent staining improves detection.
Balantioides coli (formerly Balantidium coli) is the only ciliate, and the largest protozoan, to infect humans, usually via hog, rodent, or nonhuman-primate contact. Trophozoites are 40 to >200 μm (usually 50-100 μm), uniformly ciliated, with a prominent macronucleus. Cysts are 50-70 μm with a kidney-bean-shaped macronucleus.
Cryptosporidium and the coccidia
| Organism | Oocyst size | Sporulation state as passed | Mature oocyst contents | Acid-fast? | Autofluoresces? |
|---|---|---|---|---|---|
| Cryptosporidium hominis/C. parvum | 4-6 μm | Sporulated (infectious) when passed | 4 sporozoites, no sporocysts | Yes (modified cold Kinyoun) | No |
| Cyclospora cayetanensis | 8-10 μm | Unsporulated; needs 1-2 weeks environmental maturation | 2 sporocysts, each with 2 sporozoites | Variably (many ghost unstained forms) | Yes, bright green/blue under UV |
| Cystoisospora belli | 12 × 30 μm (ellipsoidal) | Unsporulated/partially sporulated; sporulates in 24-48 h at room temperature | 2 sporocysts, each with 4 sporozoites | Yes | Yes |
| Sarcocystis spp. (intestinal) | 25 × 33 μm sporulated oocyst; wall often ruptures | Sporulated when passed | 2 sporocysts, each with 4 sporozoites | Trichrome stains poorly | Yes |
Cryptosporidium infects the intestinal brush border and resists chlorination. Diagnosis uses acid-fast stain of concentrated sediment, immunofluorescence, or antigen/NAAT. Immunocompetent disease is self-limited (about 9-23 days after an 8-day incubation); AIDS patients can develop prolonged secretory diarrhea. Cyclospora cayetanensis infects only humans; unstained ghost oocysts are common and must be size-differentiated from Cryptosporidium. Cystoisospora belli can persist for months to years in AIDS. Intestinal Sarcocystis follows eating raw or undercooked beef or pork; wet-mount and autofluorescence are the practical detection methods.
Intestinal helminths
Adult helminth length spans 1 mm to more than 10 m, and egg size spans roughly 25-150 μm. Both dimensions are diagnostic. Transmission is direct person-to-person (Enterobius vermicularis, Hymenolepis nana); environmental maturation of an egg or larva (Trichuris, Ascaris, Trichostrongylus); ingestion of an intermediate host; or skin penetration by larvae (hookworms, Strongyloides, Schistosoma).
| Species | Egg/larva size | Key morphology | Diagnostic specimen |
|---|---|---|---|
| Enterobius vermicularis | Egg 50-60 × 20-40 μm | Ovoid, one side flattened, colorless; infective within hours | Perianal cellulose-tape/paddle preparation, morning, before bathing, preferably 3 consecutive mornings; stool is not preferred (historically positive in about 5-15% of confirmed cases) |
| Trichuris trichiura | 50-55 × 22-24 μm | Barrel-shaped, bipolar refractile plugs | Direct smear/concentration |
| Ascaris lumbricoides (fertile) | 55-75 × 35-50 μm | Round-oval, yellow-brown mamillated coat, thick shell, unembryonated when passed | Direct smear/concentration |
| Ascaris lumbricoides (infertile) | Up to 90 μm, elongate | Thinner, irregularly mamillated shell; disorganized internal globules | - |
| Ascaris lumbricoides (decorticated) | As fertile, minus mamillated coat | Resembles hookworm egg | - |
| Hookworm (Necator americanus, Ancylostoma duodenale, A. ceylanicum) | 58-76 × 36-40 μm | Thin-shelled, partially embryonated when passed; species eggs indistinguishable | Concentration; rhabditiform larvae have a longer buccal canal and inconspicuous genital primordium versus Strongyloides |
| Trichostrongylus spp. | Larger, more pointed than hookworm | Larvae develop and are ingested (no skin penetration) | Concentration |
| Strongyloides stercoralis (rhabditiform L1) | Larva, not egg, usually seen | Short buccal cavity, prominent genital primordium | Stool concentration/culture; up to 7 specimens |
| Strongyloides stercoralis (filariform L3) | Infective larva | Notched tail, esophagus about half body length | Sputum/BAL in hyperinfection |
| Capillaria philippinensis | 36-45 × 21 μm | Resembles Trichuris egg; thick, radially striated shell | Stool |
Enterobiasis is the most common childhood helminthic infection in the United States, Canada, and Europe; nocturnal pruritus ani is classic. Trichuriasis produces symptoms roughly in proportion to worm burden; more than 300 worms can cause dysentery-like disease and, in children, rectal prolapse. Ascaris females produce about 200,000 eggs/day. Eggs need 4-6 weeks’ environmental maturation, then hatch after ingestion, penetrate the gut, migrate to the lungs, and cause Loeffler syndrome in previously sensitized individuals. Direct fecal smears (2 mg feces each) yielding 132, 145, and 128 Ascaris eggs average 135 eggs per slide; more than 100 eggs per 2-mg slide denotes heavy infection.
Hookworm disease reflects chronic blood loss at the site of mucosal attachment. For a burden estimated at 40 adult A. duodenale and 25 adult N. americanus, midpoint daily blood loss of 0.20 mL and 0.03 mL per worm gives (40 × 0.20) + (25 × 0.03) = 8.75 mL/day, enough to produce iron-deficiency anemia over weeks to months.
Strongyloidiasis is distinctive for autoinfection: rhabditiform larvae can mature to infective filariform larvae without leaving the host, sustaining decades-long infection. T-cell-immunocompromised hosts can develop a life-threatening hyperinfection syndrome. Larva currens is a cutaneous marker of autoinfection. Agar-plate culture or coproculture gives the best sensitivity; serology is useful when infection is suspected but not demonstrable directly.
Cestodes
| Species | Egg size | Egg features | Scolex | Proglottid clue |
|---|---|---|---|---|
| Taenia spp. (eggs indistinguishable) | 31-43 μm | Spherical, thick radially striated shell, 6-hooked embryo | T. saginata: 4 suckers, unarmed; T. solium: 4 suckers, armed rostellum (2 hook rows) | T. saginata uterus: 15-20 lateral branches/side; T. solium: 7-13/side |
| Hymenolepis nana | 30-47 μm | Oval, thin, colorless; 6-hooked oncosphere with polar filaments | Armed rostellum, single hook row | All genital pores same side |
| Hymenolepis diminuta | 70-85 × 60-80 μm | Yellow-brown, moderately thick; no polar filaments | Unarmed | All genital pores same side |
| Dibothriocephalus/Adenocephalus spp. | 58-76 × 40-51 μm | Operculate, small abopercular knob | Elongate, bothria, no suckers | Wider than long, midventral genital pore, centrally rosette-like uterus |
| Dipylidium caninum | 24-40 μm, singly or in egg packets | Spherical, 6-hooked embryo | 4 suckers, small retractable rostellum | Barrel-shaped, two lateral genital pores |
T. saginata eggs are not infectious to humans, so T. saginata taeniasis cannot cause cysticercosis. Accidental ingestion of T. solium eggs causes human cysticercosis, making careful, gloved proglottid handling essential. Hymenolepis nana is the most common cestode recovered in the United States; humans can be both definitive and intermediate host via internal autoinfection. Dibothriocephalus latus can reach 10 m; a small subset of northern-European patients develop vitamin B12 deficiency because the worm competitively absorbs B12. Dipylidium caninum is a dog/cat tapeworm accidentally acquired by children who ingest an infected flea; motile proglottids likened to rice grains or cucumber seeds are usually the presenting finding.
Trematodes
Eggs are operculate except schistosome eggs, which lack an operculum and contain a mature miracidium when passed. Each species requires a specific freshwater snail as first intermediate host.
| Species | Egg size | Egg features | Route of human infection |
|---|---|---|---|
| Fasciolopsis buski / Fasciola hepatica | 130-150 × 63-90 μm (F. gigantica 160-190 × 70-90 μm) | Large, yellow-brown, operculate, unembryonated | Aquatic vegetation |
| Heterophyes heterophyes / Metagonimus yokogawai | 20-30 × 15-17 μm | Small, embryonated | Raw/undercooked freshwater fish |
| Clonorchis sinensis / Opisthorchis spp. | 25-35 × 12-20 μm | Small, yellow-brown, embryonated, shouldered operculum + small abopercular knob | Raw/undercooked freshwater fish |
| Nanophyetus salmincola | 60-80 × 34-50 μm | Broadly ovoid, operculate, yellowish-brown | Raw/smoked salmon or trout |
| Paragonimus spp. | 80-120 × 45-70 μm | Yellow-brown, shouldered operculum, thickened abopercular end | Raw/undercooked freshwater crab or crayfish |
| Schistosoma mansoni | 116-180 × 45-58 μm | Large lateral spine | Cercarial skin penetration |
| Schistosoma japonicum | 75-90 × 60-68 μm | Small, inconspicuous lateral spine | Cercarial skin penetration |
| Schistosoma mekongi | 60-70 × 52-61 μm | As S. japonicum, smaller | Cercarial skin penetration |
| Schistosoma haematobium | 112-180 × 40-70 μm | Terminal spine | Cercarial skin penetration; eggs recovered from urine |
| S. intercalatum / S. guineensis | 140-240 × 50-85 μm | Terminal spine; recovered from feces | Cercarial skin penetration |
Liver flukes reside in the biliary tree. Chronic Clonorchis/Opisthorchis infection is linked to cholangiocarcinoma. Spurious Fasciola egg passage from eating infected liver is ruled out with a liver-free-diet follow-up stool exam. Lung flukes encyst in a host fibrotic capsule communicating with a bronchus, so eggs reach sputum or, if swallowed, stool. Blood flukes are dioecious. Three symptom phases are cercarial dermatitis, Katayama fever, and chronic fibrosis (hepatic pipe-stem fibrosis for intestinal species; bladder fibrosis and squamous-cell bladder carcinoma association for S. haematobium). Flotation under-recovers heavy schistosome eggs; sedimentation is required.
Tissue helminths
| Species | Sheath (Giemsa) | Periodicity | Tail | Vector |
|---|---|---|---|---|
| Wuchereria bancrofti | Present, does not stain | Usually nocturnal | Pointed, nuclei do not reach the tip | Culex, Aedes, Anopheles |
| Brugia malayi | Present, stains bright pink with Giemsa (not universal) | Nocturnal | Swollen tip with two discrete nuclei | Mosquitoes |
| Loa loa | Present, does not stain with Giemsa | Diurnal | Nuclei extend to the rounded tip | Chrysops deer flies |
| Onchocerca volvulus | Absent | Nonperiodic (dermal, not blood) | No nuclei in tail tip | Simulium black flies |
| Mansonella perstans | Absent | Nonperiodic | Nuclei extend to tail tip | Culicoides midges |
Wuchereria bancrofti causes classic lymphatic filariasis progressing to lymphedema and, in severe disease, elephantiasis. Loa loa produces migratory Calabar swellings and may be seen crossing the conjunctiva. Onchocerca volvulus is a leading cause of blindness in remaining endemic areas; diagnosis is by skin snip placed in saline. Zoonotic Dirofilaria produces a pulmonary coin lesion or subcutaneous nodule and rarely, if ever, circulating microfilariae in the accidental human host.
Other tissue nematodes include Dracunculus medinensis (Guinea worm); Angiostrongylus cantonensis (eosinophilic meningoencephalitis after ingesting infective larvae from snails, slugs, or contaminated produce); Trichinella (undercooked wild boar, bear, walrus, or unregulated pork; diagnosis rests on epidemiologic history plus EIA; muscle biopsy has low sensitivity); cutaneous larva migrans from dog/cat hookworm; visceral larva migrans from Toxocara canis (serology, because the organism is rarely recovered); and Anisakis/Pseudoterranova (raw-fish anisakiasis, usually diagnosed by endoscopic recovery).
Calcareous corpuscles mark cestode tissue in histologic sections. Neurocysticercosis is a leading cause of adult-onset seizures in endemic areas; enzyme-linked immunotransfer blot serology is more sensitive than crude-antigen ELISA. Hydatid disease serology uses EIA or IHA screening followed by confirmatory immunoblot.
| Larval form | Causative species | Structure |
|---|---|---|
| Cysticercus | Taenia solium | Translucent fluid-filled sac ≥5 mm with a single inverted protoscolex |
| Unilocular hydatid | Echinococcus granulosus complex | Single (± daughter) cyst containing brood capsules and thousands of protoscoleces; hydatid sand |
| Multilocular/alveolar hydatid | E. multilocularis | Invasive alveolar growth without an outer capsule; mimics hepatic carcinoma |
| Polycystic hydatid | E. vogeli, E. oligarthrus | Invasive but produces brood capsules and protoscoleces; Latin America |
| Sparganum | Spirometra spp. | Migratory subcutaneous larva |
| Coenurus | Taenia multiceps, T. serialis | Large transparent sac with numerous budding scoleces |
Parasitic infection in the immunocompromised host
Cellular (T-cell) immune defects cause most parasitic predisposition. Two important exceptions are more severe giardiasis with humoral immunodeficiency and more severe babesiosis after splenectomy. HIV co-infection does not markedly worsen malaria, schistosomiasis, ascariasis, amebiasis, or filariasis. Cryptosporidiosis and toxoplasmosis are more severe or more frequent in immunocompromised hosts; reactivation CNS toxoplasmosis is classically associated with AIDS. Strongyloidiasis is a particular problem in transplant recipients, HTLV-1 infection, and chemotherapy rather than in AIDS per se.
| Organism | Typical immunocompromised setting | Laboratory diagnosis |
|---|---|---|
| Cryptosporidium spp. | Prolonged watery diarrhea (AIDS, transplant) | Modified acid-fast stain or DFA on concentrated stool; antigen or NAAT; oocysts 4-6 μm |
| Cyclospora cayetanensis / Cystoisospora belli | Prolonged diarrhea and malabsorption | Modified acid-fast stain; size (8-10 μm Cyclospora; 12 × 30 μm Cystoisospora); Cyclospora autofluoresces under UV; NAAT for C. cayetanensis |
| Toxoplasma gondii | Reactivation CNS disease (AIDS); disseminated disease after transplant | IgG documents latent infection; IgM and IgG avidity help time infection; NAAT on CSF, blood, or tissue for active disease |
| Strongyloides stercoralis | Hyperinfection or dissemination (corticosteroids, HTLV-1, transplant) | Multiple stool examinations or agar-plate culture; sputum or BAL for filariform larvae in hyperinfection; serology as a screen before immunosuppression |
| Giardia duodenalis | Persistent diarrhea, more severe with humoral immunodeficiency | Stool antigen, DFA, or NAAT; microscopy of cysts and trophozoites |
| Babesia spp. | Severe hemolysis, especially after splenectomy | Thick and thin blood films (Maltese-cross tetrads); NAAT; IFA is not a test for acute disease |
References
- Centers for Disease Control and Prevention. Trichomoniasis. In: Sexually Transmitted Infections Treatment Guidelines, 2021. Accessed August 31, 2026.
- Centers for Disease Control and Prevention. Diagnosing pinworms. Accessed August 31, 2026.